Jonsson CB, Figueiredo LT, Vapalahti O, 2010. A global perspective on hantavirus ecology, epidemiology, and disease. Clin Microbiol Rev 23: 412–441.
Allen LJS, McCormack RK, Jonsson CB, 2006. Mathematical models for hantavirus infection in rodents. Bull Math Biol 68: 511–524.
Sauvage F, Langlais M, Pontier D, 2007. Predicting the emergence of human hantavirus disease using a combination of viral dynamics and rodent demographic patterns. Epidemiol Infect 135: 46–56.
Carroll DS, Mills JN, Montgomery JM, Bausch DG, Blair PJ, Burans JP, Felices V, Gianella A, Iihoshi N, Nichol ST, Olson JG, Rogers DS, Salazar M, Ksiazek TG, 2005. Hantavirus pulmonary syndrome in central Bolivia: relationships between reservoir hosts, habitats, and viral genotypes. Am J Trop Med Hyg 72: 42–46.
Mills JN, Schmidt K, Ellis BA, Calderón G, Enria D, Ksiazek TG, 2007. A longitudinal study of hantavirus infection in three sympatric reservoir species in agroecosystems on the Argentine Pampa. Vector Borne Zoonotic Dis 7: 229–240.
Patterson BD, 1994. Accumulating knowledge on the dimensions of biodiversity: systematic perspectives on Neotropical mammals. Biodivers Lett 2: 79–86.
Rosa ES, Mills JN, Padula PJ, Elkhoury MR, Ksiazek TG, Mendes WS, Santos ED, Araújo GC, Martinez VP, Rosa JF, Edelstein A, Vasconcelos PF, 2005. Newly recognized hantaviruses associated with hantavirus pulmonary syndrome in northern Brazil: partial genetic characterization of viruses and serologic implication of likely reservoirs. Vector Borne Zoonotic Dis 5: 11–19.
Medeiros DB, da Rosa ES, Marques AA, Simith DB, Carnero AR, Chiang JO, Prazeres ITE, Vasconcelos PFC, Nunes MRT, 2010. Circulation of hantaviruses in the influence area of the Cuiabá-Santarém Highway. Mem Inst Oswaldo Cruz 105: 665–671.
Travassos da Rosa ES, Medeiros DB, Nunes MR, Simith DB, de Souza Pereira A, Elkhoury MR, Lavocat M, Marques AAR, Via AV, D'Andrea P, Bonvincino CR, Lemos ERS, Vasconcelos PFC, 2011. Pygmy rice rat as potential host of Castelo dos Sonhos Hantavirus. Emerg Infect Dis 17: 1527–1530.
Firth C, Tokarz A, Simith DB, Nunes MRT, Bhat M, Rosa EST, Medeiros DBA, Palacio G, Vasconcelos PFC, Lipkin WI, 2012. Diversity and distribution of hantaviruses in South America. J Virol 84: 13756–13766.
Matheus S, Djossou F, Moua D, Bourbigot AM, Hommel D, Lacoste V, Dussart P, Lavergne A, 2010. Hantavirus pulmonary syndrome, French Guiana. Emerg Infect Dis 16: 739–741.
Lim BK, 2012. Preliminary assessment of neotropical mammal DNA barcodes: an underestimation of biodiversity. Open Zool J 5: 10–17.
Johnson AM, Bowen MD, Ksiazek TG, Williams RJ, Bryan RT, Mills JN, Peters CJ, Nichol ST, 1997. Laguna Negra virus associated with HPS in western Paraguay and Bolivia. Virology 238: 115–127.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739.
Nylander JAA, 2004. MrModeltest v2. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala University.
Ronquist F, Huelsenbeck JP, 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
Matheus S, Lavergne A, de Thoisy B, Dussart P, Lacoste V, 2012. Complete genome sequence of a novel hantavirus variant of Rio Mamoré virus, Maripa virus, from French Guiana. J Virol 86: 5399.
Billings AN, Rollin PE, Milazzo ML, Molina CP, Eyzaguirre EJ, Livingstone W, Ksiazek TG, Fulhorst CF, 2010. Pathology of Black Creek Canal virus infection in juvenile hispid cotton rats (Sigmodon hispidus). Vector Borne Zoonotic Dis 10: 621–628.
Boone JD, Otteson EW, McGwire KC, Villard P, Rowe JE, St Jeor SC, 1998. Ecology and demographics of hantavirus infections in rodent populations in the Walker River Basin of Nevada and California. Am J Trop Med Hyg 59: 445–451.
Vincent MJ, Quiroz E, Gracia F, Sanchez AJ, Ksiazek TG, Kitsutani PT, Ruedas LA, Tinnin DS, Caceres L, Garcia A, Rollin PE, Mills JN, Peters CJ, Nichol ST, 2000. Hantavirus pulmonary syndrome in Panama: identification of novel hantaviruses and their likely reservoirs. Virology 277: 14–19.
Suzan G, Giermakowski JT, Marce E, Suzan-Azpiri H, Armién B, Yates TL, 2006. Modeling hantavirus reservoir species dominance in high seroprevalence areas on the Azuero Peninsula of Panama. Am J Trop Med Hyg 74: 1103–1110.
Chu YK, Goodin D, Owen RD, Koch D, Jonsson CB, 2009. Sympatry of 2 hantavirus strains, Paraguay, 2003–2007. Emerg Infect Dis 15: 1977–1980.
Milazzo ML, Cajimat MN, Hanson JD, Bradley RD, Quintana M, Sherman C, Velásquez RT, Fulhorst CF, 2006. Catacamas virus, a hantaviral species naturally associated with Oryzomys couesi (Coues' oryzomys) in Honduras. Am J Trop Med Hyg 75: 1003–1010.
Raboni SM, Hoffmann FG, Oliveira RC, Teixeira BR, Bonvincino CR, Stella RC, Carstensen S, Bordignon J, D'Andrea PS, Lemos ERS, do Santos CND, 2009. Phylogenetic characterization of hantaviruses from wild rodents and hantavirus pulmonary syndrome cases in the state of Parana (southern Brazil). J Gen Virol 90: 2166–2171.
Wisz MS, Hijmans RJ, Li R, Peterson AT, Graham CH, Guisan A, 2008. Effects of sample size on the performance of species distribution models. Divers Distrib 14: 763–773.
Phillips SJ, Anderson RP, Schapire RE, 2006. Maximum entropy modeling of species geographic distributions. Ecol Modell 190: 231–259.
Voss RS, 1991. An introduction to the Neotropical muroid rodent genus Zygodontomys. B Am Mus Nat Hist 210: 1–113.
Gond V, Freycon V, Molino JF, Brunaux O, Ingrassia F, Joubert P, Pekel JF, Prévost MF, Thierron V, Trombe PJ, Sabatier D, 2011. Broad-scale spatial pattern of forest landscapes types in the Guiana shield. Int J Appl Earth Obs Geoinf 13: 357–367.
Guitet S, Cornu JF, Brunaux O, Betbeder J, Carozza JM, Richard-Hansen C, 2013. Landform and landscape mapping, French Guiana (South America). J Maps, doi:10.1080/17445647.2013.785371.
de Thoisy B, Richard-Hansen C, Goguillon B, Joubert P, Obstancias J, Winterton P, Brosse S, 2010. Rapid evaluation of threats to biodiversity: human footprint score and large vertebrate species responses in French Guiana. Biodivers Conserv 19: 1567–1584.
Dudík M, Schapire RE, Phillips SJ, 2005. Correcting sample selection bias in maximum entropy density estimation. Adv Neural Inf Process Syst 18: 323–330.
Raes N, ter Steege H, 2007. A null-model for significance testing of presence-only species distribution models. Ecography (Cop.) 30: 727–736.
Wilson DE, Reeder DM, eds. 2005. Mammal Species of the World. A Taxonomic and Geographic Reference. Baltimore, MD: The Johns Hopkins University Press.
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A molecular screening of wild-caught rodents was conducted in French Guiana, South America to identify hosts of the hantavirus Maripa described in 2008 in a hantavirus pulmonary syndrome (HPS) case. Over a 9-year period, 418 echimyids and murids were captured. Viral RNA was detected in two sigmodontine rodents, Oligoryzomys fulvescens and Zygodontomys brevicauda, trapped close to the house of a second HPS case that occurred in 2009 and an O. fulvescens close to the fourth HPS case identified in 2013. Sequences from the rodents had 96% and 97% nucleotide identity (fragment of S and M segments, respectively) with the sequence of the first human HPS case. Phylogenetic reconstructions based on the complete sequence of the S segment show that Maripa virus is closely related to Rio Mamore hantavirus. Using environmental descriptors of trapping sites, including vegetation, landscape units, rain, and human disturbance, a maximal entropy-based species distribution model allowed for identification of areas of higher predicted occurrence of the two rodents, where emergence risks of Maripa virus are expected to be higher.
Financial support: This study was supported by Fonds Européen de Développement Régional (FEDER) and assistance from Région Guyane and Direction Régionale pour la Recherche et la Technologie. This study benefited from European Commission Grant REGPOT-CT-2011-285837-STRonGer in the frame of FP7 and an Investissement d'Avenir Grant managed by Agence Nationale de la Recherche (Centre d’Etude de la Biodiversité Amazonienne [CEBA]; ANR-10-LABX-25-01).
Authors' addresses: Benoît de Thoisy, Amandine Guidez, Damien Donato, Vincent Lacoste, and Anne Lavergne, Laboratoire des Interactions Virus-Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana, E-mails: bdethoisy@pasteur-cayenne.fr, aguidez@hotmail.fr, ddonato@pasteur-cayenne.fr, vlacoste@pasteur-cayenne.fr, and alavergne@pasteur-cayenne.fr. Séverine Matheus, Laboratoire de Virologie, Centre National de Reference des Arbovirus, Virus Influenza et Hantavirus, Laboratoires Associés–Pôle Antilles Guyane, Institut Pasteur de la Guyane, Cayenne, French Guiana, E-mail: smatheus@pasteur-cayenne.fr. François Catzeflis, Laboratoire de Paléontologie, Paléobiologie et Phylogénie, Institut des Sciences de l'Evolution, UMR5554, Montpellier, France, E-mail: francois.catzeflis@univ-montp2.fr. Luc Clément and Sébastien Barrioz, Association Kwata, Cayenne, French Guiana, E-mails: lucclement@hotmail.fr and seb.kwata@orange.fr. Jean-François Cornu, Unité Mixte de Recherche (UMR) Biologie des ORganismes et des Ecosystèmes (BOREA), Département Milieux et Peuplements Aquatiques, Museum National d’Histoire Naturelle (MNHN), Centre National d’Etude Scientifique (CNRS) 7208, Institut de Recherche pour le Développement (IRD) 207, Université Pierre et Marie Curie (UPMC), Muséum National d'Histoire Naturelle, Cayenne, French Guiana, and Office National des Forêts, Cayenne, French Guiana, E-mail: jfrancoiscornu@wanadoo.fr. Olivier Brunaux and Stéphane Guitet, Office National des Forêts, Cayenne, French Guiana, E-mails: olivier.brunaux@onf.fr and stephane.guitet@cirad.fr.
Jonsson CB, Figueiredo LT, Vapalahti O, 2010. A global perspective on hantavirus ecology, epidemiology, and disease. Clin Microbiol Rev 23: 412–441.
Allen LJS, McCormack RK, Jonsson CB, 2006. Mathematical models for hantavirus infection in rodents. Bull Math Biol 68: 511–524.
Sauvage F, Langlais M, Pontier D, 2007. Predicting the emergence of human hantavirus disease using a combination of viral dynamics and rodent demographic patterns. Epidemiol Infect 135: 46–56.
Carroll DS, Mills JN, Montgomery JM, Bausch DG, Blair PJ, Burans JP, Felices V, Gianella A, Iihoshi N, Nichol ST, Olson JG, Rogers DS, Salazar M, Ksiazek TG, 2005. Hantavirus pulmonary syndrome in central Bolivia: relationships between reservoir hosts, habitats, and viral genotypes. Am J Trop Med Hyg 72: 42–46.
Mills JN, Schmidt K, Ellis BA, Calderón G, Enria D, Ksiazek TG, 2007. A longitudinal study of hantavirus infection in three sympatric reservoir species in agroecosystems on the Argentine Pampa. Vector Borne Zoonotic Dis 7: 229–240.
Patterson BD, 1994. Accumulating knowledge on the dimensions of biodiversity: systematic perspectives on Neotropical mammals. Biodivers Lett 2: 79–86.
Rosa ES, Mills JN, Padula PJ, Elkhoury MR, Ksiazek TG, Mendes WS, Santos ED, Araújo GC, Martinez VP, Rosa JF, Edelstein A, Vasconcelos PF, 2005. Newly recognized hantaviruses associated with hantavirus pulmonary syndrome in northern Brazil: partial genetic characterization of viruses and serologic implication of likely reservoirs. Vector Borne Zoonotic Dis 5: 11–19.
Medeiros DB, da Rosa ES, Marques AA, Simith DB, Carnero AR, Chiang JO, Prazeres ITE, Vasconcelos PFC, Nunes MRT, 2010. Circulation of hantaviruses in the influence area of the Cuiabá-Santarém Highway. Mem Inst Oswaldo Cruz 105: 665–671.
Travassos da Rosa ES, Medeiros DB, Nunes MR, Simith DB, de Souza Pereira A, Elkhoury MR, Lavocat M, Marques AAR, Via AV, D'Andrea P, Bonvincino CR, Lemos ERS, Vasconcelos PFC, 2011. Pygmy rice rat as potential host of Castelo dos Sonhos Hantavirus. Emerg Infect Dis 17: 1527–1530.
Firth C, Tokarz A, Simith DB, Nunes MRT, Bhat M, Rosa EST, Medeiros DBA, Palacio G, Vasconcelos PFC, Lipkin WI, 2012. Diversity and distribution of hantaviruses in South America. J Virol 84: 13756–13766.
Matheus S, Djossou F, Moua D, Bourbigot AM, Hommel D, Lacoste V, Dussart P, Lavergne A, 2010. Hantavirus pulmonary syndrome, French Guiana. Emerg Infect Dis 16: 739–741.
Lim BK, 2012. Preliminary assessment of neotropical mammal DNA barcodes: an underestimation of biodiversity. Open Zool J 5: 10–17.
Johnson AM, Bowen MD, Ksiazek TG, Williams RJ, Bryan RT, Mills JN, Peters CJ, Nichol ST, 1997. Laguna Negra virus associated with HPS in western Paraguay and Bolivia. Virology 238: 115–127.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S, 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731–2739.
Nylander JAA, 2004. MrModeltest v2. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala University.
Ronquist F, Huelsenbeck JP, 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572–1574.
Matheus S, Lavergne A, de Thoisy B, Dussart P, Lacoste V, 2012. Complete genome sequence of a novel hantavirus variant of Rio Mamoré virus, Maripa virus, from French Guiana. J Virol 86: 5399.
Billings AN, Rollin PE, Milazzo ML, Molina CP, Eyzaguirre EJ, Livingstone W, Ksiazek TG, Fulhorst CF, 2010. Pathology of Black Creek Canal virus infection in juvenile hispid cotton rats (Sigmodon hispidus). Vector Borne Zoonotic Dis 10: 621–628.
Boone JD, Otteson EW, McGwire KC, Villard P, Rowe JE, St Jeor SC, 1998. Ecology and demographics of hantavirus infections in rodent populations in the Walker River Basin of Nevada and California. Am J Trop Med Hyg 59: 445–451.
Vincent MJ, Quiroz E, Gracia F, Sanchez AJ, Ksiazek TG, Kitsutani PT, Ruedas LA, Tinnin DS, Caceres L, Garcia A, Rollin PE, Mills JN, Peters CJ, Nichol ST, 2000. Hantavirus pulmonary syndrome in Panama: identification of novel hantaviruses and their likely reservoirs. Virology 277: 14–19.
Suzan G, Giermakowski JT, Marce E, Suzan-Azpiri H, Armién B, Yates TL, 2006. Modeling hantavirus reservoir species dominance in high seroprevalence areas on the Azuero Peninsula of Panama. Am J Trop Med Hyg 74: 1103–1110.
Chu YK, Goodin D, Owen RD, Koch D, Jonsson CB, 2009. Sympatry of 2 hantavirus strains, Paraguay, 2003–2007. Emerg Infect Dis 15: 1977–1980.
Milazzo ML, Cajimat MN, Hanson JD, Bradley RD, Quintana M, Sherman C, Velásquez RT, Fulhorst CF, 2006. Catacamas virus, a hantaviral species naturally associated with Oryzomys couesi (Coues' oryzomys) in Honduras. Am J Trop Med Hyg 75: 1003–1010.
Raboni SM, Hoffmann FG, Oliveira RC, Teixeira BR, Bonvincino CR, Stella RC, Carstensen S, Bordignon J, D'Andrea PS, Lemos ERS, do Santos CND, 2009. Phylogenetic characterization of hantaviruses from wild rodents and hantavirus pulmonary syndrome cases in the state of Parana (southern Brazil). J Gen Virol 90: 2166–2171.
Wisz MS, Hijmans RJ, Li R, Peterson AT, Graham CH, Guisan A, 2008. Effects of sample size on the performance of species distribution models. Divers Distrib 14: 763–773.
Phillips SJ, Anderson RP, Schapire RE, 2006. Maximum entropy modeling of species geographic distributions. Ecol Modell 190: 231–259.
Voss RS, 1991. An introduction to the Neotropical muroid rodent genus Zygodontomys. B Am Mus Nat Hist 210: 1–113.
Gond V, Freycon V, Molino JF, Brunaux O, Ingrassia F, Joubert P, Pekel JF, Prévost MF, Thierron V, Trombe PJ, Sabatier D, 2011. Broad-scale spatial pattern of forest landscapes types in the Guiana shield. Int J Appl Earth Obs Geoinf 13: 357–367.
Guitet S, Cornu JF, Brunaux O, Betbeder J, Carozza JM, Richard-Hansen C, 2013. Landform and landscape mapping, French Guiana (South America). J Maps, doi:10.1080/17445647.2013.785371.
de Thoisy B, Richard-Hansen C, Goguillon B, Joubert P, Obstancias J, Winterton P, Brosse S, 2010. Rapid evaluation of threats to biodiversity: human footprint score and large vertebrate species responses in French Guiana. Biodivers Conserv 19: 1567–1584.
Dudík M, Schapire RE, Phillips SJ, 2005. Correcting sample selection bias in maximum entropy density estimation. Adv Neural Inf Process Syst 18: 323–330.
Raes N, ter Steege H, 2007. A null-model for significance testing of presence-only species distribution models. Ecography (Cop.) 30: 727–736.
Wilson DE, Reeder DM, eds. 2005. Mammal Species of the World. A Taxonomic and Geographic Reference. Baltimore, MD: The Johns Hopkins University Press.
Past two years | Past Year | Past 30 Days | |
---|---|---|---|
Abstract Views | 45 | 45 | 7 |
Full Text Views | 558 | 147 | 0 |
PDF Downloads | 104 | 22 | 0 |