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1
Lindenbach BD, Rice CM, 2001. Flaviviridae: The virus and their replication. Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE, eds. Virology. Philadelphia: Lippincott Williams and Wilkins, 991–1125.
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2
Hori H, Morita K, Igarashi A, 1986. Oligonucleotide fingerprint analysis on Japanese encephalitis virus strains isolated in Japan and Thailand. Acta Virol 30 :353–359.
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3
Banerjee K, Ranadive SN, 1989. Oligonucleotiede fingerprint analysis of Japanese encephalitis virus strains of different geographical origin. Indian J Med Res 89 :201–216.
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4
Chen WR, Tesh RB, Rico-Hesse R, 1990. Genetic variation of Japanese encephalitis virus in nature. J Gen Virol 71 :2915–2922.
-
5
Chen WR, Rico-Hesse R, Tesh RB, 1992. A new genotype of Japanese encephalitis virus from Indonesia. Am J Trop Med Hyg 47 :61–69.
-
6
Huong VTQ, Ha DQ, Deubel V, 1993. Genetic study of Japanese encephalitis viruses from Vietnam. Am J Trop Med Hyg 49 :538–544.
-
7
Chung YJ, Nam JH, Ban SJ, Cho HW, 1996. Antigenic and genetic analysis of Japanese encephalitis virus isolated from Korea. Am J Trop Med Hyg 55 :91–97.
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8
Ma SP, Arakaki S, Makino Y, Fukunaga T, 1996. Molecular epidemiology of Japanese encephalitis virus in Okinawa. Microbiol Immunol 40 :847–855.
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9
Tsuchie H, Oda K, Vythilingam I, Thayan R, Vijayamalar B, Sinniah M, Wada T, Tanaka H, Kurimura T, Igarashi A, 1997. Genotypes of Japanese encephalitis virus isolates in three states in Malaysia. Am J Trop Med Hyg 56 :153–158.
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10
Jan LR, Yueh YY, Wu YC, Horng CB, Wang GR, 2000. Genetic variation of Japanese encephalitis virus in Taiwan. Am J Trop Med Hyg 62 :446–452.
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11
Takegami T, Ishak H, Miyamoto C, Hirai Y, Kamimura K, 2000. Isolation and molecular comparison of Japanese encephalitis virus in Ishikawa, Japan. Jpn J Infect Dis 53 :178–179.
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12
Nam JH, Chae SL, Won SY, Kim EJ, Yoon KS, Kim BI, Jeong YS, Cho HW, 2001. Genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate. Am J Trop Med Hyg 65 :388–392.
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13
Pyke AT, Williams DT, Nisbet DJ, Den Hurk AF, Taylor CT, Johansen CA, Macdonald J, Hall RA, Simmons RJ, Mason RJV, Lee JM, Ritchie SA, Smith GA, Mackenzie JS, 2001. The appearance of a second genotype of Japanese encephalitis virus in the Australasian region. Am J Trop Med Hyg 65 :747–753.
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14
Ali A, Igarashi A, 1997. Antigenic and genetic variations among Japanese encephalitis virus strains belonging to genotype 1. Microbiol Immunol 41 :241–252.
-
15
Saitou N, Nei M, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 :406–425.
-
16
Thompson JD, Higgins DG, Gibson TJ, 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 :4673–4680.
-
17
Page RDM, 1996. Treeview: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12 :357–358.
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18
Igarashi A, 2002. Control of Japanese encephalitis in Japan: immunization of humans and animals, and vector control. Curr Top Microbiol Immunol 267 :139–152.
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19
Matsunaga Y, Yabe S, Taniguchi K, Nakayama M, Kurane I, 1999. Current status of Japanese encephalitis in Japan. Kansenshogaku Zasshi 73 :97–103.
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SHORT REPORT: A MAJOR GENOTYPE OF JAPANESE ENCEPHALITIS VIRUS CURRENTLY CIRCULATING IN JAPAN
SHAO-PING MA
SHAO-PING MA
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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YASUKO YOSHIDA
YASUKO YOSHIDA
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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YOSHIHIRO MAKINO
YOSHIHIRO MAKINO
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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MASAYUKI TADANO
MASAYUKI TADANO
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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TETSURO ONO
TETSURO ONO
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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MASAO OGAWA
MASAO OGAWA
Division of Epidemiology, Department of Infectious Diseases, Oita Medical University, Oita, Japan; Department of Microbiology, Tokyo Metropolitan Research Laboratory of Public Health, Tokyo, Japan; Department of Virology, Faculty of Medicine, University of the Ryukyus, Okinawa, Japan; Oita Prefectural Institute of Health and Environment, Oita, Japan
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A 240-nucleotide sequence of the capsid/premembrane gene region of 23 Japanese encephalitis virus (JEV) strains isolated in Tokyo and Oita, Japan was determined and phylogenetic analyses were performed. All the strains clustered into two distinct genotypes (III and I). All strains isolated before 1991 belonged to genotype III, while those isolated after 1994 belonged to genotype I. In addition, the strains of the genotype I isolated in Japan showed a close genetic relationship with those from Korea and Malaysia.
Author Notes
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-
1
Lindenbach BD, Rice CM, 2001. Flaviviridae: The virus and their replication. Knipe DM, Howley PM, Griffin DE, Martin MA, Lamb RA, Roizman B, Straus SE, eds. Virology. Philadelphia: Lippincott Williams and Wilkins, 991–1125.
-
2
Hori H, Morita K, Igarashi A, 1986. Oligonucleotide fingerprint analysis on Japanese encephalitis virus strains isolated in Japan and Thailand. Acta Virol 30 :353–359.
-
3
Banerjee K, Ranadive SN, 1989. Oligonucleotiede fingerprint analysis of Japanese encephalitis virus strains of different geographical origin. Indian J Med Res 89 :201–216.
-
4
Chen WR, Tesh RB, Rico-Hesse R, 1990. Genetic variation of Japanese encephalitis virus in nature. J Gen Virol 71 :2915–2922.
-
5
Chen WR, Rico-Hesse R, Tesh RB, 1992. A new genotype of Japanese encephalitis virus from Indonesia. Am J Trop Med Hyg 47 :61–69.
-
6
Huong VTQ, Ha DQ, Deubel V, 1993. Genetic study of Japanese encephalitis viruses from Vietnam. Am J Trop Med Hyg 49 :538–544.
-
7
Chung YJ, Nam JH, Ban SJ, Cho HW, 1996. Antigenic and genetic analysis of Japanese encephalitis virus isolated from Korea. Am J Trop Med Hyg 55 :91–97.
-
8
Ma SP, Arakaki S, Makino Y, Fukunaga T, 1996. Molecular epidemiology of Japanese encephalitis virus in Okinawa. Microbiol Immunol 40 :847–855.
-
9
Tsuchie H, Oda K, Vythilingam I, Thayan R, Vijayamalar B, Sinniah M, Wada T, Tanaka H, Kurimura T, Igarashi A, 1997. Genotypes of Japanese encephalitis virus isolates in three states in Malaysia. Am J Trop Med Hyg 56 :153–158.
-
10
Jan LR, Yueh YY, Wu YC, Horng CB, Wang GR, 2000. Genetic variation of Japanese encephalitis virus in Taiwan. Am J Trop Med Hyg 62 :446–452.
-
11
Takegami T, Ishak H, Miyamoto C, Hirai Y, Kamimura K, 2000. Isolation and molecular comparison of Japanese encephalitis virus in Ishikawa, Japan. Jpn J Infect Dis 53 :178–179.
-
12
Nam JH, Chae SL, Won SY, Kim EJ, Yoon KS, Kim BI, Jeong YS, Cho HW, 2001. Genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate. Am J Trop Med Hyg 65 :388–392.
-
13
Pyke AT, Williams DT, Nisbet DJ, Den Hurk AF, Taylor CT, Johansen CA, Macdonald J, Hall RA, Simmons RJ, Mason RJV, Lee JM, Ritchie SA, Smith GA, Mackenzie JS, 2001. The appearance of a second genotype of Japanese encephalitis virus in the Australasian region. Am J Trop Med Hyg 65 :747–753.
-
14
Ali A, Igarashi A, 1997. Antigenic and genetic variations among Japanese encephalitis virus strains belonging to genotype 1. Microbiol Immunol 41 :241–252.
-
15
Saitou N, Nei M, 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 :406–425.
-
16
Thompson JD, Higgins DG, Gibson TJ, 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 :4673–4680.
-
17
Page RDM, 1996. Treeview: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12 :357–358.
-
18
Igarashi A, 2002. Control of Japanese encephalitis in Japan: immunization of humans and animals, and vector control. Curr Top Microbiol Immunol 267 :139–152.
-
19
Matsunaga Y, Yabe S, Taniguchi K, Nakayama M, Kurane I, 1999. Current status of Japanese encephalitis in Japan. Kansenshogaku Zasshi 73 :97–103.
| Past two years | Past Year | Past 30 Days | |
|---|---|---|---|
| Abstract Views | 21 | 21 | 7 |
| Full Text Views | 433 | 257 | 0 |
| PDF Downloads | 74 | 20 | 0 |