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| ABSTRACT |
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| INTRODUCTION |
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Nucleic acid amplification techniques such as the polymerase chain reaction (PCR) have diagnostic sensitivities on the order of 95% in acute lesions, but their practical utility in clinical and field settings is limited by their high costs, infrastructural requirements, and lack of trained personnel.8,10 Thus, culture-based testing remains a practical approach for under-resourced settings. Cultivation has the further advantage of isolating organisms for drug susceptibility testing, speciation, and genotyping, which are important in countries where infection with L. (V.) braziliensis can lead to mucosal disease, and diverse Leishmania species coexist, as is the case in Peru.
Traditional culture methods consist of biphasic culture systems (blood agar with a liquid overlay that is sampled periodically throughout incubation for the presence of motile promastigotes) and have sensitivities on the order of 40–75%.11–14 The microculture method11 consists of 70-µL capillary tubes with single-phase liquid medium supplemented with varying concentrations of fetal bovine serum (FBS). It has the advantage of being less costly because of the smaller volume of medium required and a 10-fold cost reduction between traditional culture tubes and capillary tubes, easier to use, and more sensitive, even when parasite burden is low.11,15–18 The higher sensitivity of microculture is thought to be related to the microaerophilic conditions and high CO2 levels established within the system, both of which are permissive to amastigote-to-promastigote transformation.11,19–21 One limitation of microculture is that the organism, once isolated, is relatively inaccessible because of the sealed ends of the capillary tubes. We postulated that a monophasic liquid medium in 1.5-mL Eppendorf (Hamburg, Germany) tubes (miniculture) may capture the advantages of microculture and traditional culture systems. Like capillary tubes, Eppendorf tubes are inexpensive, have a small volume, and would enable easy generation of microaerophilia without a significant dilutional effect. And like traditional culture, these tubes would enable easy access to the isolate for post-culture analysis including speciation and drug susceptibility testing.
We have previously demonstrated the superiority of microculture compared with traditional culture for isolation of Leishmania parasites from cutaneous lesions in Peru by using RPMI 1640 medium with 10% FBS.18 With the objective of optimizing culture performance, we evaluated a 20% FBS–enriched microculture method and novel miniculture method by comparing them to traditional culture and other methods including leishmanin skin testing, lesion smear, and PCR for the diagnosis of CL in patients coming to a specialized leishmaniasis clinic in Lima, Peru.
| METHODS |
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Study population. Consecutive patients presenting to the Leishmaniasis Clinic for evaluation of skin lesions were approached to participate in this study and screened for eligibility criteria. We included patients who were referred to the Leishmaniasis Clinic for suspected CL, had a clinical indication for skin scraping or aspirate, and were able to give verbal informed consent for the diagnostic procedure. We excluded patients with intercurrent bacterial or fungal superinfection of the ulcer and those undergoing active treatment of CL.
Sampling. Lesion aspirates and culture. Skin lesions were cleansed with topical antiseptic and aspirated in duplicate by inserting a 20-gauge needle with syringe containing 0.6 mL of sterile phosphate-buffered saline with 1,000 U/mL of penicillin and 0.3 mg/mL of streptomycin into the outer border and base of the lesion and vigorously aspirating tissue fluid as the syringe was rotated. Aspirated fluid was divided evenly in a biosafety cabinet under sterile conditions and inoculated in parallel and duplicate as follows: 1) 200 µL into 16 x 110 mm flat-sided tissue culture tubes (Nalge Nunc International, Rochester, NY) containing 3 mL modified Novy-MacNeal-Nicolle (NNN) medium (blood agar base, cat. no. 245400; Difco, Detroit, MI) with 15% defibrinated rabbit blood, 2) 200 µL into 1.5-mL sterile Eppendorf tubes containing 1.3 mL of RPMI 1640 medium (Invitrogen, Carlsbad, CA) supplemented with L-glutamine, 20% FBS, and 2 mM NaHCO3 and the pH adjusted to 7.3 (20% RPMI 1640 miniculture), or 3) 60 µL of a 1:1 mixture of aspirate and RPMI 1640 medium containing 20% FBS into sterile, non-heparinized 1 x 75 mm capillary tubes (Chase Scientific Glass, Rockwood, TN). For inoculation of capillary tubes, 200 µL of aspirate was first mixed with 200 µL of RPMI 1640 medium containing 20% FBS in a sterile Eppendorf tube. After inoculation, capillary tubes were sealed with commercially available capillary tube sealant (Fisher Scientific, Ottawa, Ontario, Canada). The remaining sample was stored at –20°C for qualitative PCR testing. Cultures were labeled with the patients unique identifier and date of collection, incubated horizontally at 22–26°C under standard atmospheric conditions, and examined every 1–2 days under an inverted microscope at 200x magnification. Cultures were incubated and examined for 21 days before being considered negative. Positive control cultures were inoculated as described for study specimens once a week. Un-inoculated negative controls were also set up once a week.
Smears. Smears were obtained to quantify the amastigote burden in the lesion. After cleansing with topical antiseptic, lesion material was scraped from the ulcer base and border using a sterile lancet and spread on a glass slide. Slides were air-dried, fixed in methanol, and stained with Giemsa. Slides were examined under light microscopy and amastigotes were quantitated as per the method of Chulay and Bryceson.22 Lancets were stored at –20°C in 1.5-mL Eppendorf tubes containing 700 µL of 100% ethanol for qualitative PCR testing.
Leishmanin skin test.
Leishmanin skin testing measures delayed-type hypersensitivity reactions to an intradermal injection of killed promastigote suspension. After cleaning the volar surface of the forearm with topical antiseptic, 0.1 mL of sterile, heat-killed promastigote lysate in 0.005% thimerosal was injected intradermally. Leishmanin skin tests were read 48 hours after administration, and a positive result was indicated by
5 mm of erythema and induration as previously described.23
Isolation of kinetoplast DNA (kDNA) from aspirates and lancets. Prior to DNA extraction, frozen aspirates were incubated at room temperature with 500 µL of TE buffer (10 mM Tris-HCl, 1 mM EDTA) for 5 minutes to remove contaminants. Samples were then centrifuged at 8,050 x g for 10 minutes and the supernatant was discarded. Tissue traces were removed from stored lancets using sterile micropipette tips and transferred to microcentrifuge tubes. The kDNA isolation was performed with the phenol/chloroform/isoamyl alcohol method as previously described.24
Polymerase chain reaction.
The PCR was performed using the HotStar Taq DNA Polymerase Kit (Qiagen, Lima, Peru). The final volume of the reaction mixture was 25 µL. The PCR conditions were as follows: 95°C for 15 minutes, followed by 35 cycles of denaturation at 94°C for 30 seconds, primer annealing at 55°C for 30 seconds, extension at 72°C for 30 seconds, and a final extension step at 72°C for 10 minutes (iCycler iQ; Bio-Rad, Hercules, CA). Two pairs of primers were used for this reaction. The first, specific for Leishmania subgenus Viannia, had the following sequences: MP1-L (fwd) 5'-TACTCCCCGACATGCCTCTG-3' and MP3-H (rev) 5'-GAACGGGGTTTCTGTATGC-3', and generated a product of 70 basepairs.25 Sequences of control primers, which amplify a region of the human beta hemoglobin gene, were HBBL (fwd) 5'-GGCAGACTTCTCCTCAGGAGTC-3' and HBBR (rev) 5'-CTTAGACCTCACCCTGTGGAGC-3'. These primers generated a product of 197 basepairs. Amplicons were visualized after electrophoresis on 4% agarose gels (BioMOL; Promega, Lima, Peru) and stained with ethidium bromide (Figure 1
).
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Sample size calculation.
On the basis of existing literature,8–10,18,26,27 we estimated the overall sensitivity of traditional culture methods to be 55% and the mean number of days to positivity for all lesion samples to be 5 ± 0.5 days for traditional culture versus 3 ± 0.5 days for microculture. To detect a 40% increase in sensitivity with microculture, and a significant difference in time to positivity, assuming an
= 0.05 and a power of 80%, 74 lesions were required per group. For sensitivity analysis, the aforementioned composite reference standard was applied, and the unit of analysis was the lesion. Because multiple, anatomically distinct lesions within a patient result from different bites, with the exception of "sporotrichoid" L. (V.) braziliensis infection, lesions were assumed to not be correlated within patients.
Statistical analysis. Descriptive statistics (mean, SD, median, range) were calculated for continuous variables, and differences were compared using two-tailed t-test or, in the case of ordinally transformed, non-normally distributed variables, Mann-Whitney rank sum test. Differences in time to culture positivity were compared between groups using Kruskal-Wallis one-way analysis of variance on ranks. Categorical variables were quantitated by proportions, and differences between the groups were compared using Yates corrected chi-square analysis. Differences in sensitivities were compared using the z-test. Statistical analyses were performed using SigmaStat 2.03 software (SPSS Inc., Chicago, IL). Level of significance was set at P < 0.05.
| RESULTS |
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Using the composite reference standard (at least two of four test results were positive), we showed that 59 lesions fulfilled criteria for a diagnosis of CL. Sixty-seven lesions were positive by at least one test, 46 were positive by three or more tests, and 34 were positive by all four tests.
Culture.
Sensitivity.
Of the 59 lesions that were positive by at least two of four diagnostic tests, 50 were culture positive: 50 by microculture, 45 in Eppendorf tubes containing RPMI 1640 medium containing 20% FBS (miniculture), and 35 in traditional culture tubes containing NNN medium. The overall sensitivity of microculture was 84.7% (95% confidence interval [CI] = 75.5–93.9%); traditional culture with NNN medium had a sensitivity of 59.3% (95% CI = 46.8–71.8%) (P = 0.001) (Table 1
). Miniculture in RPMI 1640 medium containing 20% FBS had a sensitivity of 76.3% (95% CI = 62.7–84.2%) (P = 0.042 compared with traditional culture). When the individual patient was used as the unit of analysis, sensitivities did not change appreciably from the per-lesion analysis, and remained statistically significant: 84.8%, 78.2%, and 58.7% in microculture, RPMI 1640 medium containing 20% FBS miniculture, and NNN medium, respectively.
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Polymerase chain reaction.
Sixty lesions were positive by PCR (Figure 1
), yielding a sensitivity of 96.6% (95% CI = 92–100%) (Table 1
). However, only 57 of those positive by PCR fulfilled composite reference standard diagnostic criteria. Therefore, in three lesions, PCR was the only positive test result. Compared with the composite reference standard, specificity of PCR was 80% (95% CI = 60–100%) (Table 1
). Subgenus PCR was performed on all kDNA-PCR positive specimens, and post-hoc on two specimens that were kDNA negative, but composite reference standard positive. In kDNA-positive lesions, subgenus discrimination showed that all belonged to members of the Leishmania Viannia complex. The two lesions that were kDNA negative but composite reference standard positive were negative by subgenus PCR.
Leishmanin skin test.
Fifty-seven lesions were from patients with positive leishmanin skin test results, yielding a sensitivity of 89.7% (95% CI = 81.9–97.5%) (Table 1
). In all but three patients with a positive leishmanin skin test result, at least one other diagnostic test showed a positive result. In the one patient whose final diagnosis was biopsy-confirmed sporotrichosis, the leishmanin skin test result was negative.
Table 3
provides a comparison of sensitivity and specificity of diagnostic methods on the basis of lesion appearance. Although numbers of nodular and verrucous lesions were too small for statistical comparison, we observed that methods based on direct detection of the parasite (i.e., smear and culture) were generally less sensitive for these types of lesions.
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| DISCUSSION |
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In addition to improved sensitivity, time-to-culture positivity was also reduced with both microculture and miniculture, which afforded a two-day incubation savings compared with traditional NNN medium culture. However, enrichment of the microculture medium to RPMI 1640 medium containing 20% FBS did not result in any additional incubation savings over what has been previously attained with RPMI 1640 medium containing 10% FBS.18 Administration of systemic antimonial therapy early in the course of infection with L. (V.) braziliensis has been associated with a reduced risk of developing mucosal lesions.28–30 However, pentavalent antimonial therapy for New World CL is potentially toxic. Thus, treatment initiation only follows definitive diagnosis and is not administered empirically. Pentavalent antimonials including sodium stibogluconate and meglumine antimoniate are toxic to the liver, bone marrow, and heart, where induction of cardiac arrhythmias caused by QTc prolongation can occur.6,7 Thus, highly sensitive and specific diagnostic testing with rapid turnaround time is critical for appropriate management of CL. Microculture and miniculture enable rapid isolation of the causative organism, which may facilitate more rapid species identification in centers where these capabilities exist. Species confirmation is particularly advantageous in regions where species-specific responses to pentavalent antimonials are observed.31
Miniculture, although less sensitive than microculture, enables rapid cultivation of the organism, and because of easy access to the cultured parasite in Eppendorf tubes, provides a simple, economical means of propagating parasites for further analysis such as drug susceptibility testing, genomic screening, or species identification by restriction fragment length polymorphism or isoenzyme analysis. The RPMI 1640 medium–based culture and propagation methods also eliminate the need for live-animal maintenance as a source for conventional blood-based Leishmania media, and the attendant risks associated with live animal work.
Giemsa-stained lesion smear, leishmanin skin testing, and kDNA PCR all had clinical sensitivities and specificities on the order of what has been reported previously.14,18,27,32–35 Although positive predictive values were high for all tests, indicating that positive test results are generally good predictors of disease, negative predictive values were poor for all assays, although highest with PCR. Three lesion aspirates from patients with suspected CL were positive only by kDNA and subgenus PCR, and were therefore considered negative because they failed to fulfill the composite reference criteria. These results may reflect the outperformance of PCR compared with the composite reference standard in terms of sensitivity. Because all three patients were clinically suspected to have the disease, it is possible that PCR amplified genomic material of parasites existing below the threshold of detection for the other assays. In their comparison of several PCR assays for the diagnosis of CL, Bensoussan and others similarly found that kDNA PCR had the greatest sensitivity, which led to several specimens being positive only by this test.32 We have similarly reported high sensitivity coupled with poor specificity of this assay when compared with a less sensitive consensus standard.18 Herein lies one of the major challenges of evaluating diagnostic tests in the absence of a well-performing reference standard.36
Although still limited by sensitivity compared with molecular methods, culture-based diagnostic testing for CL can offer a low-tech means of isolating parasites for diagnostic confirmation, species identification, and further analyses. Species confirmation remains an important diagnostic aide in regions such as Peru where multiple Leishmania species coexist and portend different prognoses. Well-documented species-specific responses to therapy in CL further underscore the clinical utility of speciation.31,37 Culture will therefore remain a necessary diagnostic complement to other assays, such as smear and skin testing, until the economic and logistical complexities of direct molecular speciation are vastly improved. We have demonstrated that enrichment of microculture with RPMI 1640 medium containing 20% FBS leads to substantial improvement in sensitivity, although affords no incubation savings over microculture in RPMI 1640 medium containing 10% FBS. Microculture has been consistently demonstrated to be more sensitive and economical, from a cost and time perspective, than traditional culture techniques used for the diagnosis of both Old World and New World species of Leishmania.11,15–18 Microculture has demonstrated superiority over traditional culture for isolation of L. tropica, L. infantum, L. donovani, and most recently, L. (V.) braziliensis.11,15–18 Our work further supports the utility of microculture for the isolation of Leishmania parasites from cutaneous lesions, and shows that RPMI 1640 medium containing 20% FBS miniculture as a slightly less-sensitive, although practical, alternative to traditional culture.
Received July 14, 2008. Accepted for publication August 27, 2008.
Acknowledgments: We thank Dr. Eduardo Gotuzzo and Ana Luz Quispe (Instituto de Medicina Tropical Alexander von Humboldt) for logistical support throughout this study.
* Address correspondence to Andrea K. Boggild, Tropical Diseases Unit, Toronto General Hospital, 200 Elizabeth Street, North Wing, 13th Floor, Room 1350, Toronto, Ontario M5G 2C4, Canada. E-mail: andrea.boggild{at}utoronto.ca ![]()
Authors addresses: Andrea K. Boggild, Tropical Diseases Unit, Toronto General Hospital, 200 Elizabeth Street, North Wing, 13th Floor, Room 1350, Toronto, Ontario M5G 2C4, Canada, E-mail: andrea.boggild{at}utoronto.ca. Donald E. Low, Department of Microbiology, Mount Sinai Hospital, 600 University Avenue, Room 1485, Toronto, Ontario M5G 1X5, Canada, E-mail: Dlow{at}mtsinai.on.ca. Cesar Miranda-Verastegui, Diego Espinosa, Dalila Martinez-Medina, and Alejandro Llanos-Cuentas, Instituto de Medicina Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado #430, URB Ingenieria, Lima 31, Peru, E-mails: cesar.miranda{at}mail.mcgill.ca, diegoespinosa{at}gmail.com, dalmaext{at}hotmail.com, and allanos{at}upch.edu.pe. Jorge Arevalo, Departmento de Bioquimica, Biologia Molecular y Farmacologia, Facultad de Ciencias, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado #430, URB Ingenieria, Lima 31, Peru, E-mail: biomoljazz{at}gmail.com.
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