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| ABSTRACT |
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| INTRODUCTION |
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Despite reports of cross-resistance between CQ and AQ, the molecular mechanisms of AQ resistance and the role of mutations in the P. falciparum chloroquine resistance transporter (pfcrt) or P. falciparum multidrug resistance 1 (pfmdr1) genes remain unclear. The similarity in the chemical structures of CQ and AQ13 and their likely common mode of action13,14 is suggestive that molecular markers of CQ resistance may be useful for detection of parasites resistant to AQ. Two parasite proteins associated with the lysosomal membrane, Pgh1 (the protein product of the pfmdr1 gene) and PfCRT (the protein product of the pfcrt gene), are thought to be important to the process of CQ resistance. Point mutations in two P. falciparum genes encoding these proteins have been associated with in vitro CQ resistance in laboratory lines or field isolates,1522 and have been used as molecular markers of CQ resistance in vivo in many malaria-endemic countries.2334 In this study, the association between pfcrtT76 and pfmdr1Y86 alleles and AQ treatment outcome in children with acute uncomplicated P. falciparum malaria was investigated in Ibadan in southwestern Nigeria. We showed that the combination of mutant pfcrtT76 and pfmdr1Y86 alleles was associated with in vivo AQ resistance and that this association was age dependent. In addition, analysis of post-treatment samples obtained from patients who failed therapy showed that AQ selects parasites with pfcrtT76 and pfmdr1 alleles. Furthermore, we explored the possibility of using these markers as tools for monitoring the emergence and spread of resistance to AQ in countries that have introduced AQ in combination with other antimalarials as first-line treatment of malaria.
| METHODS |
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The protocol for the study was reviewed and approved by the Joint University of Ibadan/University College Hospital Institutional Review Committee at the University of Ibadan, Nigeria and the Harvard School of Public Health Human Subject Committee. Documented informed consent was obtained from parents and guardians.
Patient treatment and follow-up.
Children were eligible to join the study if they were
12 years of age, had symptoms of acute uncomplicated malaria, with pure P. falciparum parasitemia between 2,000 and 500,000 asexual forms/µL of blood, a temperature
37.5°C or recent history of fever, absence of other concomitant illness, no history of antimalarial use in the two weeks preceding presentation, negative urine test results for antimalarial drugs (Dill-Glazko and Lignin), and written informed consent given by parents or guardians. Patients with severe malaria,35 severe malnutrition, serious underlying diseases (renal, cardiac, or hepatic), and known allergy to study drugs were excluded from the study. The disease history was recorded by asking patients or their parents when the present symptomatic period had started, and was followed by a full physical examination.
Enrolled children were treated with standard regiment of AQ (30 mg/kg of body weight over a three-day period). The drug was given orally in the clinic and all patients were observed for at least 1 hour after drug administration to ensure the drug was not vomited. Children who vomited the medication were excluded from the study. If necessary, children were provided with antipyretics (paracetamol tablets, 1015 mg/kg every 8 hours for 2448 hours). A physician controlled drug administration. Follow-up with clinical and parasitologic evaluation was done daily for seven days (days 17) and then on days 14, 21, and 28. Thick and thin blood films prepared from a finger prick were stained with Giemsa and examined by light microscopy under an oil-immersion objective at 1,000x magnification by two independent assessors. Parasitemia (asexual or sexual) in thick films was estimated by counting asexual or sexual parasites relative to 1,000 leukocytes. From this figure, the parasite density was calculated assuming a leukocyte count of 8,000/µL of blood. Two drops of blood was also blotted onto 3MM filter paper (Whatman International Ltd., Maidstone, United Kingdom) for extraction and analysis of parasite DNA.
Classification of responses to treatment was done according to World Health Organization criteria.36 The cure rate on day 28 of follow-up was defined as the percentage of children who remained free of parasitemia. Treatment failures rates were corrected by merozoite surface protein 2 (msp-2) genotyping of parasites at enrollment and recrudescence of infections.33,37 Children who failed treatment (within 14 days) with AQ were re-treated with artemether (9.6 mg/kg over a five-day period and were regarded as treatment failures). Children were re-treated whenever they became symptomatic (usually between 14 and 21 days after initial enrollment).
Extraction of DNA from samples collected on filter paper. Parasite genomic DNA was extracted from blood samples collected on filter paper using the Chelex extraction method as described by Plowe and others.38 Part of the DNA extracted from each sample was used immediately for polymerase chain reaction (PCR) and the rest was stored at 20°C.
Amplification of P. falciparum genes and characterization of parasites population in infected patients. The regions of the pfcrt and pfmdr-1 genes surrounding the polymorphisms of interest (in the smear-positive samples collected pre-treatment and post-treatment) were amplified by nested PCR and then subjected to restriction fragment length polymorphism (RFLP) analysis as previously described.32,33 In addition, each P. falciparum infection in this study was characterized on the basis of msp-2 polymorphism performed on paired pre-treatment and post-treatment parasites samples obtained from patients.33,37 This genetic marker was chosen because a recent report33 from the same study site has demonstrated that msp-2 is the best and most reliable marker to evaluate diversity and complexity of P. falciparum infections in both pre-treatment and post-treatment isolates because it showed more clones than other markers (msp-1 or glutamate-rich protein). Thus, msp-2 analyses of paired pre-treatment and post-treatment parasites were used to distinguish true treatment failures from new infections. The complexity of infection was calculated as the average number of distinct fragments of FC27 and IC1/3D7 per PCR-positive sample.33,37
Statistical analysis. For a best assessment of genetically determined parasite phenotypes, only parasitologic treatment failures were used to define AQ resistance. For analysis purposes, each isolate was coded based on the presence or absence of a resistance-associated allele. For example, infections with mixed wild-type/mutant alleles of pfcrt or pfmdr1 were treated as mutants. Data were analyzed using the statistical programs SPSS for Windows version 10.01 (SPSS, Chicago, IL) and Epi-Info version 6.4 (Centers for Disease Control and Prevention, Atlanta, GA). For univariate analysis, frequencies were compared by calculating chi-square values with Yates correction and Fishers exact tests. Normally distributed, continuous data were compared by Students t-tests and analysis of variance. Paired samples were compared using the paired t-test. Data not conforming to a normal distribution were compared by the Mann-Whitney U test (or Wilcoxon ranked sum test) and the Kruskal-Wallis test. Multiple logistic regression analysis was performed to assess the weight of all variables on treatment outcome and clearance of resistant parasites. All tests of significance were two-tailed. P values < 0.05 indicated statistical significance.
| RESULTS |
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5 years of age, and 46% (6 of 13) were > 5 years of age. Age (P = 0.240) or parasite density (P = 0.999) at enrollment were not significantly associated with AQ treatment failure.
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Prevalence of pfmdr1 and pfcrt mutations in patients isolates of P. falciparum.
Molecular assays were performed on all isolates collected from patients prior to treatment. The presence of pfcrtT76 and pfmdr1Y86 mutations known to be involved in resistance to CQ treatment in west Africa was evaluated. Mutation analysis was successful in all 101 of the isolates collected from the patients. Results for pfcrt and pfmdr1 mutations evaluated are shown in Table 2
. The prevalence of mutant pfcrtT76 (62%) allele was higher than that of the mutant pfmdr1Y86 (29%) allele. However, mixed pfmdr1Y86 + pfmdr1N86 (28%) or pfcrtT76 + pfcrtK76 (16%) alleles were common in many samples. The prevalence of both mutant pfcrtT76 and pfmdr1Y86 alleles (46%) was also evaluated in samples collected before drug treatment (Table 2
).
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2 = 14.44, P = 0.00024) or the combination of mutant pfcrtT76 and pfmdr1Y86 (
2 = 10.08, P = 0.0015) were strongly selected by the drug (Table 4
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5 years of age and > 5 years of age). Only 9 (9%) of 101 samples obtained at enrollment prior to treatment had no mutation in both genes, and all patients with these infections were cured with AQ regardless of the age category. The associations between the presence of both mutant pfmdr1Y86 and pfcrtT76 alleles and treatment failures was significant (OR = 10, 95% CI = 1.0793.43, P = 0.035) only in children
5 years of age and not in older children (> 5 years of age) (OR = 2.26, 95% CI = 1.333.92, P = 0.405).
Pfcrt/pfmdr1 mutants and parasites clearance.
The role of some patient characteristics on the ability to clear the infections with pfcrt/pfmdr1 mutant parasites was evaluated by analyzing the potential association between parasites clearance rates, age, parasites density or fever (body temperature
37.5°C) at enrollment as described previously by Djimde and others.39 Univariate analysis showed that the clearance of pfcrtT76 and pfmdr1Y86 mutants parasites by patients was significantly associated with age (P = 0.0017), and fever at enrollment (
2 = 7.36, P = 0.0066) (Table 5
). There was no association between pfcrt/pfmdr1 mutant parasites clearance and parasite density (P = 0.7). However, when logistic regression analysis was performed to confirm the weight of univariate analysis results (age and fever at enrollment), only age was independently associated with the clearance of the resistant phenotype (P = 0.012). Children
5 years of age showed the lowest rate (55%, n = 11) of clearance of resistant parasites compared with much older children who showed a higher rate (84%, n = 26) of clearance of pfcrt/pfmdr1 mutant parasites.
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| DISCUSSION |
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The data from this study show an increase in rate of resistance to AQ in the study area. This increase might have been exacerbated by the extensive use of CQ in Nigeria. Cross-resistance between CQ and AQ has been observed in the study area10 and other disease-endemic areas.40 The increased in vivo AQ resistance in Nigeria observed in this study is of great concern because this drug is currently being used in this country in combination with AS for the treatment of acute uncomplicated malaria. A study in the Gambia41 has shown using reverse transcriptase-PCR that low density sub-populations of asexual parasites can escape short-acting drugs such as AS. Resistant parasites then likely to recrudesce under the selective force of the second drug in the combination and be transmitted to mosquitoes.41 Therefore, we cannot rule out the possibility of increasing selection of AQ-resistant parasites with the increasing use of AQ in combination with artesunate in the future in Nigeria.
Molecular methods that detect genetic markers of drug resistance are potentially powerful tools for tracking drug-resistant malaria. In this study, the combination of pfcrt and pfmdr1 mutations in isolates obtained from children prior to treatment was associated with in vivo AQ resistance during a 28-day clinical efficacy trial. Mutant pfcrtT76 and pfmdr1Y86 alleles were observed in 62% and 29% of the samples, respectively. The mutant pfcrtT76 allele was not a useful predictor of clinical outcome, and the mutant pfmdr1Y86 allele weakly predicted patients clinical outcome. The data from this study are different from a previous study in Sudan,42 which found that the mutant pfcrtT76 allele is associated with AQ treatment failure. This may be explained by differences in the epidemiology of CQ resistance between the two study sites and the high prevalence of the pfcrtT76 allele observed in Ibadan in southwestern Nigeria.
The high prevalence of the mutant pfcrtT76 allele (62%) observed in Ibadan, Nigeria confirms recent reports of the high prevalence rate of this allele in parasites obtained from same study site,32,33 and is also consistent with rates ranging from 60% to 100% reported in other malaria-endemic regions.25,2931,34 However, analysis of baseline samples (samples collected from all patients at enrollment) and post-treatment samples from patients who failed AQ treatment showed the selection of parasites with mutant pfcrtT76 or pfmdr1Y86 or both mutant alleles by the drug (Table 4
), although this selection was significant only for parasites with the mutant pfmdr1Y86 allele or both mutant pfcrtT76 and pfmdr1Y86 alleles. This selection process was further confirmed by msp-2 analysis, which showed a reduction in the average number of distinct clones of P. falciparum per infection from 4.38 at enrollment to 2.23 at recrudescence.
The non-significant selection of the mutant pfcrtT76 by AQ may be due to the high prevalence of this allele in the P. falciparum population from Ibadan, Nigeria.32 Selection of pfmdr1Y86 by AQ has also been reported previously in the Gambia19 and Kenya.43 Although the importance of point mutations in pfcrt in producing CQ resistance is beyond dispute,4447 recent transfection studies of pfcrt have shown that isolates expressing the mutant pfcrtT76 allele retain sensitivity to AQ while showing a reduced susceptibility to monodesethyl AQ, the active metabolite of AQ.44 Therefore, it is possible that during treatment with AQ, monodesethyl AQ may be the driving force behind the selection of the mutant pfmdr1Y86 or pfcrtT76 alleles or the combination of these mutant alleles as observed in post-treatment samples of patients who failed treatment. The selection of the mutant pfcrtT76 and pfmdr1Y86 alleles indicates the primary involvement of these two genes in the mediation of AQ resistance. Most importantly, the absence of the wild-type pfcrtK76 allele in post-treatment samples of patients who failed treatment (Table 4
) may indicate the critical role of the mutant pfcrtT76 allele in AQ resistance. Thus, similar to CQ resistance, AQ resistance in P. falciparum may depend primarily on mutation(s) in pfcrt and additional mutations in pfmdr1 or other Plasmodium genes may also have significant roles in increasing resistance to the drug.
The combination of pfcrtT76 and pfmdr1Y86 mutations was associated with AQ treatment failure. These two alleles have been shown to be in linkage disequilibrium in CQ-resistant isolates of P. falciparum from The Gambia48 and Nigeria49 (Happi CT and others, unpublished data). The similarity in the chemical structures of CQ and AQ13 and their likely common mode of action13,14 suggests that the molecular basis of resistance to these two drugs may be similar. These previous findings may explain the strong association (P = 0.006) between the combination of pfcrtT76 and pfmdr1Y86 mutant alleles and in vivo AQ failure observed in this study, although, age-stratified analysis of the effect of these two mutations on treatment outcome did not show a significant association with treatment failure in children more than five years of age. One possible explanation for this finding is the immunopotentiation of AQ efficacy by the hosts. Previous studies have shown that in areas of moderate or high malaria transmission, drugs with suboptimal efficacy could cure infections in patients (>5 years of age) who have developed a degree of antiparasitic immunity to malaria (due to repeated exposure to various circulating drug-sensitive and drug-resistant strains of parasites).36,50,51
The ability of some children in this study to clear infections with parasites with both pfcrtT76 and pfmdrY86 mutations was strongly associated with age (> 5 years) and fever at enrollment. The association between fever at enrollment and clearance of drug-resistant parasites is most likely related to an appropriate cytokine response (i.e., tumor necrosis factor-
, interferon-
) in the children clearing peripheral parasitemia. However, the synergy between the appropriate fever response of the host and drug treatment is unclear in light of this finding. The data from this study further show that children less than five years of age are highly vulnerable to malaria and cannot clear their parasites as efficiently as other age groups (Table 5
). These data are similar to those in a previous report from Mali.39
Overall, the findings from this study have significant bearings and implications on drug discovery and public health in Nigeria where AQ is combined with other antimalarial drugs (including artemisinin derivatives) for treatment of acute uncomplicated malaria. First, the evidence of selection of mutant pfcrtT76 and pfmdr1Y86 alleles by AQ may provide some insight in the previously observed cross-resistance between CQ and AQ in vivo.11,40 Second, mutant pfcrtT76 and pfmdr1Y86 alleles currently used as molecular markers of CQ resistance can also be useful for monitoring the spread of AQ resistance in areas of low resistance to the drug such as west Africa. Third, clearance of the AQ-resistant phenotype by children less than five years of age suggests that for countries that have not yet changed their antimalarial drug policy, changes aimed at switching first-line treatment to drug combinations could be initially targeted to children less than five years of age, especially when the cost of these combinations is an obstacle to implementing the policy.
Ultimately, there is a need to validate mutant pfcrtT76 and pfmdr1Y86 alleles as markers for AQ resistance as proposed in this study in other malaria-endemic areas. Such an approach is necessary because it may harness the efforts aimed at the management and control of drug-resistant malaria.
Received January 4, 2006. Accepted for publication February 3, 2006.
Acknowledgments: We thank all patients and their parents or guardians for volunteering to participate in the study, and the Malaria Research and Reference Reagent Resource Centre for providing all genomic DNA used as controls for the PCR and RFLP experiments. We also thank Dr. Dan Milner (Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA) for helpful comments on the manuscript.
Financial support: This study was supported by a grant from the Fogarty International Center, Multilateral Initiative for Malaria in Africa/TDR, project ID A20239, UNICEF/UNDP/World Bank/WHO/TDR grant project ID A50337, Harvard Malaria Initiative, and International Atomic Energy Agency (IAEA) project RAF/0625. C. T. Happi is supported by a Fogarty International Research Collaboration Award (FIRCA) no. NIH RO3TW006298-01A1, the IAEA project RAF/0625, and the UNICEF/UNDP/World Bank/WHO/TDR/PAG/South-South Initiative project ID A50337.
* Address correspondence to C. T. Happi, Malaria Research Laboratories IMRAT, College of Medicine, University of Ibadan, Nigeria. E-mail: christianhappi{at}hotmail.com or chappi{at}hsph.harvard.edu ![]()
Authors addresses: C. T. Happi, Malaria Research Laboratories, Institute for Advanced Medical Research and Training, College of Medicine, University of Ibadan, Ibadan, Nigeria and Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115. G. O. Gbotosho, O. A. Folarin, O. M. Bolaji, and A. Sowunmi, Malaria Research Laboratories, Institute for Advanced Medical Research and Training, College of Medicine, University of Ibadan, Ibadan, Nigeria. D. E. Kyle and W. Milhous, Division of Experimental Therapeutics, Walter Reed Army Institute of Research, Silver Springs, MD 20910. D. F. Wirth, Department of Immunology and Infectious Diseases, Harvard School of Public Health, Boston, MA 02115. A. M. J. Oduola, Special Program for Research and Training in Tropical Diseases, World Health Organization, Geneva, Switzerland.
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