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The role of the 3'untranslated region (UTR) of the dengue virus (DENV) genome during viral translation remains to be elucidated. We assessed the contribution of well-defined RNA elements in the 3'UTR of DENV-2 to viral translation using a virus-induced reporting gene system and deoxyribozymes (DRzs) targeting the 3'UTR of the DENV-2 genome. Results show that mRNAs carrying a deletion of repeated conserved sequence (RCS2)-CS2 are translated less efficiently than wild type mRNAs. However, mRNAs with a deletion of CS1-stem loop (SL) are translated more efficiently. Thus, CS1-SL and RCS2-CS2 may have different effects on translational regulation. Additionally, the translation-suppressing effect of CS1-SL or the SL element is further confirmed in DENV-2-infected cells using DRzs. Mutagenesis studies show that, rather than the secondary structure, nucleotides 10663–10677 and 10709–10723 are responsible for translational suppression of SL. Overall, our results demonstrate that sequences and elements within the DENV-2 3'UTR regulate viral translation.
Received November 12, 2008. Accepted for publication July 27, 2009.
Acknowledgments: We thank Professor Stuart G. Siddell (University of Bristol, Bristol, United Kingdom) for reviewing the manuscript and providing useful comments, and Dr. Chune Xu for technical assistance.
Financial support: This study was supported in part by grants from National Natural Science Foundation of China (no. 30600530 and no. 30770107).
* Address correspondence to Chengfeng Qin and Ede Qin, State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, No. 20 Dongda Street, Fengtai, Beijing 100071, Peoples Republic of China. E-mail: cfqin{at}hotmail.com; qinede{at}sohu.com.
Authors address: Yan Wei, Chengfeng Qin, Tao Jiang, Xiaofeng Li, Hui Zhao, Zhongyu Liu, Yongqiang Deng, Ran Liu, Shuiping Chen, Man Yu, and Ede Qin, State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, No. 20 Dongda Street, Fengtai, Beijing 100071, Peoples Republic of China.
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